The following items from our to-do list have been successfully completed. Below this list, you can find the remaining urgent items for our proposal due date of 1/28 (items must be completed with plenty of time to spare). 

Completed items: 

*Note* please check the highlighted item. This one still must be verified. 

1. Made software plot Theta VS Gen
2. Fixed current L and R plots
   1. These now have correct axis labels, a legend, and connect data for each individual between generations.
3. Produced Veff for ARA's actual bicone parameters. 
   1. Made XF_Loop.sh submit a job for the ARA gain AraSim input file in BiconeEvolutionOSC/AraSim/Ara_Bicone6in_outputs.txt
   2. STILL MUST: Make sure that the "wait function" has been properly edited to consider the submission of this extra job in the first iteration of the loop. (Not sure if $NPOP+1 instead of $NPOP fixed it correctly) ----> CADE SHOULD LOOK AT THIS :)
4. Added plotting software for V_eff VS Generation (includes ARA's actual bicone V_eff as generated in #3).
5. Fixed the ARA hole constraint in fitnessFunction_ARA.cpp -- ie fixed the calculation to consider the correct radius "r". See http://radiorm.physics.ohio-state.edu/elog/GENETIS/28 for details. 
6. Successfully made energy a variable in setup.txt. 
   1. used the same "sed" format as before in the bash script (XF_Loop.sh).
7. Pushed to Github. 

Items to still do:

1. Save CAD models in XF: Due 1/15                                                   ------>(Cade-- second most urgent one)
2. Stop plots from popping up during run: Due 1/15                            ------>(Alex P.)
3. Add "save state" idea to loop: Due 1/15                                         ------> (Cade and maybe Alex P can help -- This is the most urgent one)
4. Figure out why fitnessFunction_ARA.cpp isn't plotting: Due 1/15     ------>  (Julie, and Alex M)
5. Run the loop and evolve for results: Due 1/24                               ------>(Alex M, Mitchell, Cade)
6. Write proposal: Final Due 1/28                                                   ------> (Amy, Kai, Julie)

Note that the people running the loop (Alex M, Mitchell, Cade) should be producing plots and saving them. Please save all plots in this dropbox folder: https://www.dropbox.com/home/GP_Antennas/NSF%20Proposal%20Plots%20(1_28_2020)

When submitting plots, please make a new folder in there and label it "Date_of_run, Energy, Generations, Individuals". For example, my folder within this dropbox link would be: "1_10, 10^19, 10, 5". I have made sample folders in this dropbox link if needed.

You can export the plots from OSC to your machine (using CP command) or can type "display NameOfPlot.png" then screenshot and crop your plot to upload to dropbox.