 Mon Dec 7 22:51:08 2020, Alex M, Important Runs
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Today I removed some of the run directories which had very little or no data or weren't worth keeping around. There are still a few that I think
can be removed, but I'm keeping them until we can get a consensus that they can definitely be removed. Below I listed the names and descriptions of
the runs that I think we should definitely preserve going forward. In general, the more data contained in the run directory, the more important it is to |
Wed Dec 2 15:24:39 2020, Alex M, Guide for Loop Errors 
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Attached is a .txt file you can find in the Evolutionary_Loop directory as Loop_Error_List.txt. It's a list of the current errors we sometimes experience
in the loop, along with how to fix them if you encounter them while running. If people encounter errors that aren't in the list, let everyone know
in the #genstudents chat on slack and update the file with the error message and when it was encountered (what state the loop was in) and the possible |
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Mon Nov 30 17:00:31 2020, Ethan Fahimi, Monday Updates
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Alex M
Kicked the loop back up. Helped Ethan and Parker with their
projects during the working meeting.
Ryan
Changed the tournament/roulette ratio, reproduction_no, and crossover_no
to be read in variables in the GA to increase the quality of life when running the algorithm and to prep the code for some testing. Format for how to call |
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Mon Nov 30 16:59:39 2020, Ethan Fahimi, Daily Update 10/30
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Name
Progress
Plans
Alex
M
Alex P
Ryan
Attempted
to make a new mutation function for the algorithm to try and address the concerns about hitting local maximums from Wednesday. Unfortunately, the |
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Mon Nov 23 18:02:40 2020, Ryan Debolt, Monday Updates
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Alex M
Kept working with Amy, Alex P, Julie, and Ben on the AraSim
fix. We fixed our issue from last week but have a new one in stage 2. It looks like the issue has to do with resetting the values for V_forfft right before
stage 2 (around line 963). Check here for the current version of Report.cc: /users/PAS0654/pattonalexo/EFieldProject/11_23_20
Ryan
Fixed |
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Fri Nov 20 17:50:05 2020, Alex M, Working Meeting 11/20/20
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Alex M
We worked with Amy to track down the
error we were getting with the AraSim fix. Alex P and I had gotten AraSim to compile, but running gave the error (at the bottom). We did a binary search
for the source of the error and determined it comes from the if statement around line 640 in Report.cc: |
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Thu Nov 19 16:42:06 2020, Alex Patton, Daily Update 11/19/20
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I hopped on with Alex M to catch him up with what has been done and changed within AraSim so far. I looked into using pointers to access arrays outside
of their declared scope and it seemed reletively easy to set up. I set up a pointer corresponding to the arrays V_forfft, T_forfft, and vmmhz_filter
and set them at the end of stage one in order to be used in stage two. Also made sure to delete the pointers at the end of stage 2 (Very Important). After |
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Fri Oct 30 17:30:16 2020, Ethan Fahimi, Daily Update 10/30
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Name
Progress
Plans
Alex
M
Alex P
Ryan
Attempted
to make a new mutation function for the algorithm to try and address the concerns about hitting local maximums from Wednesday. Unfortunately, the |
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Mon Oct 26 17:59:10 2020, Ethan Fahimi, Daily Update 10/26
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Name
Progress
Plans
Alex
M
Alex P
Ryan
I
have the testing loop finished with plotted results now. The program was able to reach optimal results very quickly. It used 100% tournament selection |
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Mon Oct 19 17:02:12 2020, Ethan Fahimi, Daily Update 10/19
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Name
Progress
Plans
Alex
M
Alex P
Ryan
Alex
P. and I put the outer radius constraint into the Asymmetric our version of the algorithm. I have also created the pseudo-fitness function to be able to |
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Fri Oct 16 17:32:49 2020, Alex Patton, Daily Update 10/16/20
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Update
Plans
for Monday
Alex M
Alex P and Ryan
Made new version of our modified GA that is asymetric. We didn't |
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Mon Oct 12 17:34:29 2020, Alex Patton, Daily Update 10/12/20
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Name
Update
Plans for Week
Alex
M
Alex P, Ryan, and Ben
Finished up writing the updated GA and got it compilable |
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Fri Oct 9 17:37:57 2020, Alex Patton, Daily Update 10/9/20
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Name
Update
Plans for Monday
Alex
M
Alex P, Ryan, and Ben
Got all functions finished and worked on adding them to main. |
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Mon Oct 5 21:06:29 2020, Everyone, Data Runs
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Machtay_20200831_Asym_Length_and_Angle 10 individuals
Machtay_20200911_Symmetric 10 individuals, fewer
neutrinos |
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Mon Oct 5 17:34:32 2020, Leo Deer, Update Monday 10/5/2020
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Name
Update
Plans for Monday
Alex
M
Alex P
Finish up mutation function and then make sure it functions |
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Fri Oct 2 17:11:25 2020, Ethan Fahimi, Update Friday 10/2/2020
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Name
Update
Plans for Monday
Alex
M
Alex P
Eliot
Leo
Today |
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Mon Sep 14 17:23:26 2020, Alex M, GENETIS Update 9/14/20
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I just wanted to give an update on what I've been doing today for GENETIS. I went ahead and recorded myself running the loop. It should be useful
for new people we're onboarding but I also went through a whole generation, which I think is interesting for everyone to understand the timescale of
each part of the loop. I'm making a small edit (I have no clue how to edit videos haha) so once I'm done I'll try to send it via email and |
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Wed Sep 9 17:28:54 2020, Alex M, Update 9/9/20
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Name
Update
Plans for tomorrow
Alex
M
I've been working on readying the loop for the transition to slurm. OSC is switching from its current job managing software
(torque/moab) to slurm, which uses some different commands but is functionally similar. Since we have places where jobs are called in the script, I've |
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Mon Aug 31 18:32:21 2020, Alex M, Daily Update 8/31/20
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Name
Update
Plans for tomorrow
Alex
M
I started working on the slides for our meeting with Wolfgang this Friday. I'll share it via one drive/email/slack tomorrow
for comments from everyone. |
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Fri Aug 28 16:31:56 2020, Alex M, First Results Slides
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Here's a power point I showed today at the GENETIS meeting for the two most recent runs we did. The first run was symmetric and we ended it at 15
generations. The second one is ongoing and is shown up through generation 9 on the power point. |